Publications – St Andrews
CRISPR antiphage defence mediated by the cyclic nucleotide-binding membrane protein Csx23
Grüschow, S., McQuarrie, S., Ackermann, K., McMahon, S., Bode, BE., Gloster, TM. & White, MF., 13 Mar 2024, (E-pub ahead of print) In: Nucleic Acids Research. 15 p., gkae167.
Research output: Contribution to journal › Article › peer-review
Pulse dipolar electron paramagnetic resonance spectroscopy distance measurements at low nanomolar concentrations: the CuII-trityl case
Ackermann, K., Heubach, C., Schiemann, O. & Bode, B. E., 31 Jan 2024, (E-pub ahead of print) In: The Journal of Physical Chemistry Letters. 15, p. 1455-1461 7 p.
Research output: Contribution to journal › Article › peer-review
Activation of Csm6 ribonuclease by cyclic nucleotide binding: in an emergency, twist to open
McQuarrie, S., Athukoralage, J. S., McMahon, S. A., Graham, S., Ackermann, K., Bode, B. E., White, M. F. & Gloster, T. M., 27 Oct 2023, In: Nucleic Acids Research. 51, 19, p. 10590-10605 16 p.
Research output: Contribution to journal › Article › peer-review
Antiviral signalling by a cyclic nucleotide activated CRISPR protease
Rouillon, C. M. J., Schneberger, N., Chi, H., Blumenstock, K., Da Vela, S., Ackermann, K., Moecking, J., Peter, M. F., Boenigk, W., Seifert, R., Bode, B. E., Schmid-Burgk, J. L., Svergun, D., Geyer, M., White, M. & Hageluken, G., 2 Feb 2023, In: Nature. 614, p. 168–174
Research output: Contribution to journal › Article › peer-review
Chalcogen controlled redox behaviour in peri-substituted S, Se and Te naphthalene derivatives
Roemmele, T. L., Knight, F. R., Crawford, E., Robertson, S. D., Bode, B. E., Buehl, M., Slawin, A. M. Z., Woollins, J. D. & Boeré, R. T., 14 Dec 2023, In: New Journal of Chemistry. 46, 21 p., 22363.
Research output: Contribution to journal › Article › peer-review
Conformational tuning improves the stability of spirocyclic nitroxides with long paramagnetic relaxation times
Sowiński, M. P., Gahlawat, S., Lund, B. A., Warnke, A-L., Hopmann, K. H., Lovett, J. E. & Haugland, M. M., 5 Jun 2023, In: Communications Chemistry. 6, 1, 8 p., 111.
Research output: Contribution to journal › Article › peer-review
Darobactin B stabilises a lateral-closed conformation of the BAM complex in E. coli cells
Haysom, S. F., Machin, J., Whitehouse, J. M., Horne, J. E., Fenn, K., Ma, Y., El Mkami, H., Böhringer, N., Schäberle, T. F., Ranson, N. A., Radford, S. E. & Pliotas, C., 21 Aug 2023, In: Angewandte Chemie International Edition. 62, 34, 8 p., e202218783.
Research output: Contribution to journal › Article › peer-review
Design of the elusive proteinaceous oxygen donor copper site suggests a promising future for copper for MRI contrast agents
Shah, A., Taylor, M. J., Molinaro, G., Anbu, S., Verdu, M., Jennings, L., Mikulska, I., Diaz-Moreno, S., El Mkami, H., Smith, G. M., Britton, M. M., Lovett, J. E. & Peacock, A. F. A., 4 Jul 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 27, e2219036120.
Research output: Contribution to journal › Article › peer-review
Dipolar-coupled entangled molecular 4f qubits
Bode, B. E., Fusco, E., Nixon, R., Buch, C., Weihe, H. & Piligkos, S., 8 Feb 2023, In: Journal of the American Chemical Society. 145, 5, p. 2877-2883 7 p.
Research output: Contribution to journal › Article › peer-review
Enhanced sensitivity for pulse dipolar EPR spectroscopy using variable-time RIDME
Wort, J., Ackermann, K., Giannoulis, A. & Bode, B. E., 1 Jul 2023, In: Journal of Magnetic Resonance. 352, 8 p., 107460.
Research output: Contribution to journal › Article › peer-review
Investigating native metal ion binding sites in mammalian histidine-rich glycoprotein
Ackermann, K., Khazaipoul, S., Wort, J., Sobczak, A. I. S., El Mkami, H., Stewart, A. J. & Bode, B. E., 12 Apr 2023, In: Journal of the American Chemical Society. 145, 14, p. 8064-8072 9 p.
Research output: Contribution to journal › Article › peer-review
Large cross-effect dynamic nuclear polarisation enhancements with kilowatt inverting chirped pulses at 94 GHz
Zhao, Y., El Mkami, H., Hunter, R. I., Casano, G., Ouari, O. & Smith, G. M., 22 Aug 2023, In: Communications Chemistry. 6, 12 p., 171.
Research output: Contribution to journal › Article › peer-review
Machine learning estimation of human body time using metabolomic profiling
Woelders, T., Revell, V., Middleton, B., Ackermann, K., Kayser, M., Raynaud, F., Skene, D. & Hut, R., 2 May 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 18, 9 p., e2212685120.
Research output: Contribution to journal › Article › peer-review
Shape dependent conformable holographic metasurfaces
Xiao, J., Hunter, R. I., Robertson, D. A., Smith, G. M., Horsley, S., Schulz, S. A. & Di Falco, A., 25 May 2023, In: Advanced Materials Technologies. 8, 10, 8 p., 2202006.
Research output: Contribution to journal › Article › peer-review
Spectroscopically orthogonal labelling to disentangle site-specific nitroxide label distributions
Vitali, V., Ackermann, K., Hagelueken, G. & Bode, B. E., 24 Sept 2023, (E-pub ahead of print) In: Applied Magnetic Resonance. First Online, 19 p.
Research output: Contribution to journal › Article › peer-review
Synthesis of mono-nitroxides and of bis-nitroxides with varying electronic through-bond communication
Giannoulis, A., Ackermann, K., Bogdanov, A., Cordes, D. B., Higgins, C., Ward, J., Slawin, A. M. Z., Taylor, J. E. & Bode, B. E., 14 Jan 2023, In: Organic & Biomolecular Chemistry. 21, 2, p. 375-385 11 p.
Research output: Contribution to journal › Article › peer-review
The photochemical mediated ring contraction of 4H-1,2,6-thiadiazines to afford 1,2,5-thiadiazol-3(2H)-one 1-oxides
Broumidis, E., Thomson, C. G., Gallagher, B., Sotorríos, L., McKendrick, K. G., Macgregor, S. A., Paterson, M. J., Lovett, J. E., Lloyd, G. O., Rosair, G. M., Kalogirou, A. S., Koutentis, P. A. & Vilela, F., 22 Sept 2023, In: Organic Letters. 25, 37, p. 6907-6912 6 p.
Research output: Contribution to journal › Article › peer-review
Triggered functional dynamics of AsLOV2 by time-resolved electron paramagnetic resonance at high magnetic fields
Maity, S., Price, B. D., Wilson, C. B., Mukherjee, A., Starck, M., Parker, D., Wilson, M. Z., Lovett, J. E., Han, S. & Sherwin, M. S., 20 Mar 2023, In: Angewandte Chemie International Edition. 62, 13, 9 p., e202212832.
Research output: Contribution to journal › Article › peer-review
Unveiling the catalytic mechanism of a processive metalloaminopeptidase
Simpson, M. C., Harding, C. J., Czekster, R., Remmel, L., Bode, B. E. & Melo Czekster, C., 4 Nov 2023, (E-pub ahead of print) In: Biochemistry. Articles ASAP, 18 p.
Research output: Contribution to journal › Article › peer-review
A low-spin CoII/Nitroxide complex for distance measurements at Q-band frequencies
Giannoulis, A., Cordes, D. B., Slawin, A. M. Z. & Bode, B. E., 11 Apr 2022, In: Magnetochemistry. 8, 4, 43.
Research output: Contribution to journal › Article › peer-review
Combined pulsed electron double resonance EPR and molecular dynamics investigations of calmodulin suggest effects of crowding agents on protein structures
Stewart, A., Shanmugam, M., Kutta, R., Scrutton, N., Lovett, J. E. & Hay, S., 6 Sept 2022, In: Biochemistry. 61, 17, p. 1735–1742 8 p.
Research output: Contribution to journal › Article › peer-review
Correction to "Pulse dipolar EPR for determining nanomolar binding affinities": (Chemical Communications (2022), 58:63, DOI:10.1039/d2cc02360a)
Ackermann, K., Wort, J. L. & Bode, B. E., 9 Aug 2022, In: Chemical Communications. 58, 67, p. 9438 1 p.
Research output: Contribution to journal › Comment/debate › peer-review
DEER data analysis software: a comparative guide
Russell, H., Cura, R. & Lovett, J. E., 1 Jun 2022, In: Frontiers in Molecular Biosciences. 9, 17 p., 915167.
Research output: Contribution to journal › Article › peer-review
Enhanced oxygen redox reversibility and capacity retention of titanium-substituted Na4/7[□1/7Ti1/7Mn5/7]O2 in sodium-ion batteries
Linnell, S., Kim, E. J., Choi, Y-S., Hirsbrunner, M., Imada, S., Pramanik, A., Fuente Cuesta, A., Miller, D., Fusco, E., Bode, B. E., Irvine, J., Duda, L., Scanlon, D. O. & Armstrong, A. R., 14 May 2022, In: Journal of Materials Chemistry A. 10, 18, p. 9941-9953
Research output: Contribution to journal › Article › peer-review
HDX-guided EPR spectroscopy to interrogate membrane protein dynamics
Lane, B. J., Wang, B., Ma, Y., Calabrese, A. N., El Mkami, H. & Pliotas, C., 16 Sept 2022, In: STAR Protocols. 3, 3, 28 p., 101562.
Research output: Contribution to journal › Review article › peer-review
Neural networks in pulsed dipolar spectroscopy: a practical guide
Keeley, J., Choudhury, T., Galazzo, L., Bordignon, E., Feintuch, A., Goldfarb, D., Russell, H., Taylor, M. J., Lovett, J. E., Eggeling, A., Fabregas Ibanez, L., Keller, K., Yulikov, M., Jeschke, G. & Kuprov, I., May 2022, In: Journal of Magnetic Resonance. 338, 14 p., 107186.
Research output: Contribution to journal › Article › peer-review
Pocket delipidation induced by membrane tension or modification leads to a structurally analogous mechanosensitive channel state
Wang, B., Lane, B. J., Kapsalis, C., Ault, J. R., Sobott, F., El Mkami, H., Calabrese, A. N., Kalli, A. C. & Pliotas, C., 7 Apr 2022, In: Structure. 30, 4, p. 608-622.e5 21 p.
Research output: Contribution to journal › Article › peer-review
Pulse dipolar EPR for determining nanomolar binding affinities
Ackermann, K., Wort, J. & Bode, B. E., 14 Aug 2022, In: Chemical Communications. 58, 63, p. 8790-8793 4 p.
Research output: Contribution to journal › Article › peer-review
Pulse dipolar electron paramagnetic resonance spectroscopy reveals buffer modulated cooperativity of metal templated protein dimerization
Oranges, M., Wort, J., Fukushima, M., Fusco, E., Ackermann, K. & Bode, B. E., 25 Aug 2022, In: The Journal of Physical Chemistry Letters. 13, 33, p. 7847-7852
Research output: Contribution to journal › Letter › peer-review
Wideband corrugated feedhorns, for radar, communications, radiometry and quasi-optics
Sung, D., Thomsen, N., Macpherson, S., Hunter, R. I., Rahman, S., Robertson, D. A., Wylde, R. J. & Smith, G. M., 29 Aug 2022, In: IEEE Open Journal of Antennas and Propagation. 3, p. 970 - 983 14 p., 9849676.
Research output: Contribution to journal › Article › peer-review
A comparison of cysteine-conjugated nitroxide spin labels for pulse dipolar EPR spectroscopy
Ackermann, K., Chapman, A. & Bode, B. E., 13 Dec 2021, In: Molecules. 26, 24, 16 p., 7534.
Research output: Contribution to journal › Article › peer-review
A general model to optimise CuII labelling efficiency of double-histidine motifs for pulse dipolar EPR applications
Wort, J., Ackermann, K., Norman, D. & Bode, B. E., 14 Feb 2021, In: Physical Chemistry Chemical Physics. 23, 6, p. 3810-3819 10 p.
Research output: Contribution to journal › Article › peer-review
Benchmark test and guidelines for DEER/PELDOR experiments on nitroxide-labeled biomolecules
Schiemann, O., Heubach, C., Abdullin, D., Ackermann, K., Azarkh, M., Bagryanskaya, E., Drescher, M., Endeward, B., Freed, J., Galazzo, L., Goldfarb, D., Hett, T., Esteban Hofer, L., Fábregas Ibáñez, L., Hustedt, E., Kucher, S., Kuprov, I., Lovett, J. E., Meyer, A., Ruthstein, S., & 10 others, 19 Oct 2021, (E-pub ahead of print) In: Journal of the American Chemical Society. Articles ASAP, 16 p.
Research output: Contribution to journal › Article › peer-review
Cation ordering and exsolution in copper-containing forms of the flexible zeolite Rho (Cu,M-Rho; M = H, Na) and their consequences for CO2 adsorption
Lozinska, M. M., Jamieson, S., Verbraeken, M. C., Miller, D. N., Bode, B., Murray, C., Brandani, S. & Wright, P. A., 9 Sept 2021, In: Chemistry - A European Journal. 27, 51, p. 13029-13039 12 p., 202101664.
Research output: Contribution to journal › Article › peer-review
Cu(OTf)2-mediated cross-coupling of nitriles and N-heterocycles with arylboronic acids to generate nitrilium and pyridinium products
Bell, N., Xu, C., Fyfe, J., Vantourout, J. C., Brals, J., Chabbra, S., Bode, B. E., Cordes, D. B., Slawin, A. M. Z., McGuire, T. M. & Watson, A. J. B., 29 Mar 2021, In: Angewandte Chemie International Edition. 60, 14, p. 7935-7940 7 p.
Research output: Contribution to journal › Article › peer-review